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docs: Add comprehensive code analysis and memory organization system
- Add detailed code analysis report with security, performance, and architecture assessment - Create memory index system for organized navigation of project documentation - Add navigation guide for efficient memory access patterns and workflows - Establish systematic documentation structure for improved project knowledge management Analysis highlights: - Overall code health: 85/100 (Excellent) - Security assessment: 95/100 (Low risk) - Production ready with comprehensive test coverage - Clean architecture following SOLID principles 🤖 Generated with Claude Code Co-Authored-By: Claude <noreply@anthropic.com>
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‎.serena/memories/memory_index.md‎

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# 📚 MCP Shell Server - Memory Index & Navigation
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## 🗂️ Memory Organization System
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### 📋 Memory Categories
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#### 🎯 **Project Core** (プロジェクト中核)
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- [`project_purpose`] - プロジェクト目的と機能概要
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- [`codebase_structure`] - コードベース構造とモジュール構成
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- [`tech_stack`] - 技術スタックと依存関係
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#### ⚙️ **Development Process** (開発プロセス)
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- [`code_style_conventions`] - コーディング規約とスタイル
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- [`suggested_commands`] - 開発用コマンド一覧
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- [`task_completion_checklist`] - タスク完了チェックリスト
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#### 📊 **Session Management** (セッション管理)
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- [`session_checkpoint_2025_09_06`] - セッションチェックポイント
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- [`session_summary_current`] - 現在セッション要約
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---
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## 🔗 Cross-References & Relationships
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### 🏗️ Architecture Flow
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```
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project_purpose ──→ codebase_structure ──→ tech_stack
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↓
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code_style_conventions
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```
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### 🔄 Development Workflow
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```
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suggested_commands ──→ task_completion_checklist
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↓ ↓
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code_style_conventions ←──── Quality Gates
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```
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### 📈 Session Continuity
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```
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session_checkpoint_2025_09_06 ──→ session_summary_current
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↓
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[All Project Memories]
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```
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---
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## 🎯 Quick Navigation
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### 🚀 **新規開発者向け** (New Developers)
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1. [`project_purpose`] - プロジェクト理解
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2. [`codebase_structure`] - コード構造把握
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3. [`tech_stack`] - 技術環境確認
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4. [`suggested_commands`] - 開発環境セットアップ
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### 🔧 **開発作業時** (During Development)
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1. [`code_style_conventions`] - コーディング規約確認
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2. [`suggested_commands`] - 実行コマンド確認
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3. [`task_completion_checklist`] - 品質確認
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### 📊 **セッション管理** (Session Management)
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1. [`session_checkpoint_2025_09_06`] - チェックポイント復元
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2. [`session_summary_current`] - 現在状況確認
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---
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## 🔍 Memory Content Summary
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### 🎯 Core Project Information
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| Memory | Type | Key Content | Last Updated |
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|--------|------|-------------|--------------|
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| `project_purpose` | 🎯 Core | MCP Shell Server概要、セキュア実行 | Current |
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| `codebase_structure` | 🏗️ Architecture | ディレクトリ構成、19テストファイル | Current |
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| `tech_stack` | 🛠️ Technology | Python 3.11+, MCP, asyncio | Current |
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### ⚙️ Development Process
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| Memory | Type | Key Content | Usage Context |
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|--------|------|-------------|---------------|
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| `code_style_conventions` | 📋 Standards | black, ruff, mypy設定 | Coding |
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| `suggested_commands` | ⚡ Commands | make test/check/format | Development |
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| `task_completion_checklist` | ✅ QA | 品質確認、リリース前確認 | Task Completion |
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### 📊 Session Context
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| Memory | Type | Key Content | Purpose |
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|--------|------|-------------|---------|
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| `session_checkpoint_2025_09_06` | 💾 Checkpoint | セッション状態、復元情報 | Session Recovery |
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| `session_summary_current` | 📄 Summary | 現セッション要約、継続性 | Context Understanding |
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---
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## 🎨 Usage Patterns
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### 📖 **Read Sequence for New Tasks**
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```mermaid
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graph TD
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A[project_purpose] --> B[codebase_structure]
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B --> C[tech_stack]
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C --> D[code_style_conventions]
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D --> E[Start Development]
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```
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### 🔄 **Development Cycle Reference**
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```mermaid
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graph LR
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A[suggested_commands] --> B[Development Work]
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B --> C[code_style_conventions]
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C --> D[task_completion_checklist]
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D --> E[Quality Gates]
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```
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### 💾 **Session Continuity Flow**
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```mermaid
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graph TD
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A[session_checkpoint_2025_09_06] --> B[Restore Context]
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B --> C[session_summary_current]
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C --> D[Continue Work]
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D --> E[Update Memories]
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```
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---
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## 🏷️ Memory Tags & Search
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### 🔍 **Search Keywords**
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- **Architecture**: `codebase_structure`, `tech_stack`
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- **Quality**: `code_style_conventions`, `task_completion_checklist`
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- **Commands**: `suggested_commands`
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- **Session**: `session_checkpoint_*`, `session_summary_*`
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- **Purpose**: `project_purpose`
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### 📊 **Content Categories**
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- **Japanese Content**: `project_purpose`, `codebase_structure`, `code_style_conventions`
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- **Mixed Content**: `suggested_commands`, `task_completion_checklist`, `tech_stack`
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- **Session Data**: `session_checkpoint_*`, `session_summary_*`
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---
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## 🎛️ Maintenance Guidelines
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### ✅ **Memory Health Indicators**
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- ✅ **Fresh**: Recently updated, current information
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- ⚠️ **Aging**: May need review and updates
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- 🔄 **Cyclical**: Regular update cycle (session memories)
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### 🔄 **Update Responsibilities**
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- **Project Core**: Update on major changes
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- **Development Process**: Update on workflow changes
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- **Session Management**: Automatic with `/sc:save`
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### 🗑️ **Cleanup Criteria**
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- Remove outdated session checkpoints (>7 days)
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- Archive obsolete development patterns
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- Consolidate duplicate information
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---
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**📝 Note**: This index serves as the central navigation hub for all project memories. Update this index when adding new memories or reorganizing existing ones.

‎.serena/memories/memory_navigation_guide.md‎

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# 🧭 Memory Navigation Guide - Quick Reference
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## 🎯 **Situation-Based Navigation**
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### 🆕 **I'm new to this project**
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**Path**: `project_purpose` → `codebase_structure` → `tech_stack` → `suggested_commands`
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- Start with project overview and architecture understanding
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- Learn the technology stack and development environment
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### 💻 **I'm starting development work**
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**Path**: `code_style_conventions` → `suggested_commands` → `task_completion_checklist`
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- Review coding standards before writing code
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- Set up proper development commands and quality gates
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### 🔧 **I need to run specific commands**
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**Direct**: → `suggested_commands`
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- Complete command reference for testing, linting, formatting
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### 📊 **I need to understand project structure**
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**Path**: `codebase_structure` ↔ `tech_stack`
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- Architectural overview with technology context
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### ✅ **I'm completing a task**
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**Path**: `task_completion_checklist` → `code_style_conventions`
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- Quality assurance steps and coding standard verification
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### 🔄 **I'm resuming work from previous session**
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**Path**: `session_checkpoint_2025_09_06` → `session_summary_current` → `memory_index`
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- Restore context and understand current state
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---
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## 🔗 **Memory Cross-Reference Map**
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### 🏗️ **Project Foundation Cluster**
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```
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project_purpose (Japanese)
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↓
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codebase_structure (Japanese)
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↓
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tech_stack (Mixed)
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```
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**Usage**: Complete project understanding from concept to implementation
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### ⚙️ **Development Process Cluster**
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```
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code_style_conventions (Japanese) ←→ task_completion_checklist (Mixed)
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↓ ↑
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suggested_commands (Mixed) ────────────────┘
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```
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**Usage**: Development workflow and quality assurance
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### 📊 **Session Context Cluster**
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```
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session_checkpoint_2025_09_06 (English) ←→ session_summary_current (English)
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↓ ↓
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[References all other memories]
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```
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**Usage**: Session continuity and context restoration
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---
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## 🎨 **Content Type Quick Reference**
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### 📝 **Japanese Primary Content**
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- `project_purpose` - プロジェクト概要 (MCP Shell Server details)
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- `codebase_structure` - コード構造 (Directory and module organization)
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- `code_style_conventions` - コーディング規約 (black, ruff, mypy settings)
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### 🌐 **Mixed Language Content**
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- `tech_stack` - 技術スタック (Python 3.11+, MCP, development tools)
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- `suggested_commands` - 開発コマンド (make commands, testing, formatting)
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- `task_completion_checklist` - 完了チェックリスト (QA steps, release preparation)
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### 🇺🇸 **English Content**
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- `session_checkpoint_2025_09_06` - Session state and recovery information
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- `session_summary_current` - Current session context and continuity
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---
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## ⚡ **Fast Access Patterns**
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### 🎯 **By Purpose**
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- **Understanding**: `project_purpose` → `codebase_structure`
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- **Setup**: `tech_stack` → `suggested_commands`
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- **Development**: `code_style_conventions` → `suggested_commands`
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- **Quality**: `task_completion_checklist` → `code_style_conventions`
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- **Session**: `session_checkpoint_2025_09_06` → `session_summary_current`
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### 🔍 **By Search Intent**
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- **"How to run tests?"** → `suggested_commands`
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- **"What's the code style?"** → `code_style_conventions`
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- **"What does this project do?"** → `project_purpose`
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- **"How is code organized?"** → `codebase_structure`
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- **"What technology is used?"** → `tech_stack`
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- **"What do I check before submitting?"** → `task_completion_checklist`
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---
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## 🎛️ **Advanced Navigation**
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### 🔄 **Dependency Chains**
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1. **Project Understanding Chain**:
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`project_purpose` → `codebase_structure` → `tech_stack`
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2. **Development Quality Chain**:
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`code_style_conventions` → `task_completion_checklist` → `suggested_commands`
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3. **Session Management Chain**:
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`session_checkpoint_2025_09_06` ↔ `session_summary_current`
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### 🎯 **Focus Areas**
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- **Architecture Focus**: `codebase_structure` + `tech_stack`
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- **Quality Focus**: `code_style_conventions` + `task_completion_checklist`
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- **Operational Focus**: `suggested_commands` + `task_completion_checklist`
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- **Context Focus**: `session_*` memories
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---
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## 📚 **Reading Order Recommendations**
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### 📖 **First-Time Project Exploration**
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1. `project_purpose` (Get the big picture)
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2. `codebase_structure` (Understand architecture)
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3. `tech_stack` (Learn technology context)
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4. `suggested_commands` (Set up environment)
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### 🔧 **Daily Development Flow**
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1. `session_summary_current` (Understand current state)
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2. `code_style_conventions` (Review standards)
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3. `suggested_commands` (Execute development commands)
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4. `task_completion_checklist` (Verify quality)
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### 📊 **Session Recovery Flow**
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1. `session_checkpoint_2025_09_06` (Restore context)
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2. `session_summary_current` (Understand recent activity)
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3. `memory_index` (Navigate to relevant memories)
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---
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## 💡 **Pro Tips**
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### 🎯 **Efficiency Tips**
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- Use `memory_index` as your starting point for unfamiliar navigation
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- Japanese content is often more detailed for core concepts
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- English content focuses on session and operational context
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- Mixed content provides practical commands and procedures
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### 🔄 **Update Awareness**
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- Session memories are frequently updated
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- Core project memories are stable but updated on major changes
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- Development process memories updated on workflow changes
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### 🎨 **Context Switching**
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- When switching between projects, start with `session_checkpoint_*`
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- When onboarding others, guide them through Project Foundation Cluster
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- When debugging, combine `codebase_structure` + `tech_stack` context

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